Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RF_0031 | atpB | RF_0031 | RF_0030 | Unknown. | ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.862 |
| RF_0031 | atpE | RF_0031 | RF_0029 | Unknown. | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.641 |
| RF_0031 | dsbG | RF_0031 | RF_0032 | Unknown. | Protein-disulfide isomerase; May be required for disulfide bond formation in some proteins; Belongs to the thioredoxin family. DsbA subfamily. | 0.620 |
| RF_0031 | polA | RF_0031 | RF_1239 | Unknown. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.546 |
| RF_0033 | dsbG | RF_0033 | RF_0032 | Transcriptional regulator. | Protein-disulfide isomerase; May be required for disulfide bond formation in some proteins; Belongs to the thioredoxin family. DsbA subfamily. | 0.580 |
| RF_0179 | dsbA | RF_0179 | RF_0662 | Unknown. | Thiol:disulfide interchange protein DsbA. | 0.490 |
| RF_0179 | dsbG | RF_0179 | RF_0032 | Unknown. | Protein-disulfide isomerase; May be required for disulfide bond formation in some proteins; Belongs to the thioredoxin family. DsbA subfamily. | 0.507 |
| RF_0179 | recO | RF_0179 | RF_0868 | Unknown. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.758 |
| atpB | RF_0031 | RF_0030 | RF_0031 | ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Unknown. | 0.862 |
| atpB | atpE | RF_0030 | RF_0029 | ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
| atpB | dsbG | RF_0030 | RF_0032 | ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | Protein-disulfide isomerase; May be required for disulfide bond formation in some proteins; Belongs to the thioredoxin family. DsbA subfamily. | 0.579 |
| atpB | polA | RF_0030 | RF_1239 | ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.629 |
| atpE | RF_0031 | RF_0029 | RF_0031 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | Unknown. | 0.641 |
| atpE | atpB | RF_0029 | RF_0030 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | ATP synthase A chain; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. | 0.999 |
| atpE | dsbG | RF_0029 | RF_0032 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | Protein-disulfide isomerase; May be required for disulfide bond formation in some proteins; Belongs to the thioredoxin family. DsbA subfamily. | 0.476 |
| atpE | polA | RF_0029 | RF_1239 | ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.555 |
| dsbA | RF_0179 | RF_0662 | RF_0179 | Thiol:disulfide interchange protein DsbA. | Unknown. | 0.490 |
| dsbA | dsbB | RF_0662 | RF_0581 | Thiol:disulfide interchange protein DsbA. | Disulfide bond formation protein DsbB. | 0.714 |
| dsbA | dsbG | RF_0662 | RF_0032 | Thiol:disulfide interchange protein DsbA. | Protein-disulfide isomerase; May be required for disulfide bond formation in some proteins; Belongs to the thioredoxin family. DsbA subfamily. | 0.608 |
| dsbA | polA | RF_0662 | RF_1239 | Thiol:disulfide interchange protein DsbA. | DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.717 |
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