Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
virB10 | virB3 | RF_0467 | RF_0087 | VirB10 protein. | Type IV secretory pathway, VirB3-like protein. | 0.983 |
virB10 | virB4_1 | RF_0467 | RF_0088 | VirB10 protein. | Type IV secretion/conjugal transfer ATPase, VirB4 family. | 0.978 |
virB10 | virB6_1 | RF_0467 | RF_0089 | VirB10 protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.924 |
virB10 | virB6_2 | RF_0467 | RF_0090 | VirB10 protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.777 |
virB10 | virB6_3 | RF_0467 | RF_0091 | VirB10 protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.906 |
virB10 | virB6_5 | RF_0467 | RF_0093 | VirB10 protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.973 |
virB10 | virB8_1 | RF_0467 | RF_0463 | VirB10 protein. | VirB8 protein. | 0.861 |
virB10 | virB8_2 | RF_0467 | RF_0465 | VirB10 protein. | VirB8 protein. | 0.990 |
virB10 | virB9_1 | RF_0467 | RF_0462 | VirB10 protein. | VirB9 protein; Probable conjugal transfer protein trbG precursor. | 0.999 |
virB10 | virB9_2 | RF_0467 | RF_0466 | VirB10 protein. | VirB9 protein precursor. | 0.997 |
virB3 | virB10 | RF_0087 | RF_0467 | Type IV secretory pathway, VirB3-like protein. | VirB10 protein. | 0.983 |
virB3 | virB4_1 | RF_0087 | RF_0088 | Type IV secretory pathway, VirB3-like protein. | Type IV secretion/conjugal transfer ATPase, VirB4 family. | 0.998 |
virB3 | virB6_1 | RF_0087 | RF_0089 | Type IV secretory pathway, VirB3-like protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.967 |
virB3 | virB6_2 | RF_0087 | RF_0090 | Type IV secretory pathway, VirB3-like protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.914 |
virB3 | virB6_3 | RF_0087 | RF_0091 | Type IV secretory pathway, VirB3-like protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.970 |
virB3 | virB6_5 | RF_0087 | RF_0093 | Type IV secretory pathway, VirB3-like protein. | TrbL/VirB6 plasmid Conjugative transfer protein. | 0.982 |
virB3 | virB8_1 | RF_0087 | RF_0463 | Type IV secretory pathway, VirB3-like protein. | VirB8 protein. | 0.911 |
virB3 | virB8_2 | RF_0087 | RF_0465 | Type IV secretory pathway, VirB3-like protein. | VirB8 protein. | 0.989 |
virB3 | virB9_1 | RF_0087 | RF_0462 | Type IV secretory pathway, VirB3-like protein. | VirB9 protein; Probable conjugal transfer protein trbG precursor. | 0.982 |
virB3 | virB9_2 | RF_0087 | RF_0466 | Type IV secretory pathway, VirB3-like protein. | VirB9 protein precursor. | 0.962 |
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