STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB6_2TrbL/VirB6 plasmid Conjugative transfer protein. (672 aa)    
Predicted Functional Partners:
virB3
Type IV secretory pathway, VirB3-like protein.
  
 
 0.959
virB4_1
Type IV secretion/conjugal transfer ATPase, VirB4 family.
  
 
 0.956
virB4_2
Type IV secretion/conjugal transfer ATPase, VirB4 family.
  
 
 0.900
virB8_2
VirB8 protein.
  
 
 0.897
virB6_3
TrbL/VirB6 plasmid Conjugative transfer protein.
     
 0.888
virB10
VirB10 protein.
  
 
 0.883
virB6_1
TrbL/VirB6 plasmid Conjugative transfer protein.
     
0.882
virB8_1
VirB8 protein.
  
 
 0.784
virB9_2
VirB9 protein precursor.
  
 
 0.742
virB9_1
VirB9 protein; Probable conjugal transfer protein trbG precursor.
  
 
 0.734
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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