rpsF protein (Rickettsia felis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpsF

30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (129 aa)

Predicted Functional Partners:

rplI

0.998

rpsR

0.998

rpsB

0.996

rpsJ

0.996

rpsN

0.996

rpsE

0.996

rpsK

0.996

rpsI

0.996

rpsG

0.996

rpsL

0.996

Your Current Organism:

Rickettsia felis

NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplI	rpsB	RF_0141	RF_0069	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.990
rplI	rpsE	RF_0141	RF_0295	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.990
rplI	rpsF	RF_0141	RF_0143	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.998
rplI	rpsG	RF_0141	RF_1154	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.991
rplI	rpsI	RF_0141	RF_0995	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991
rplI	rpsJ	RF_0141	RF_0277	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.990
rplI	rpsK	RF_0141	RF_0301	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.989
rplI	rpsL	RF_0141	RF_1155	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.982
rplI	rpsN	RF_0141	RF_0291	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.989
rplI	rpsR	RF_0141	RF_0142	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.998
rpsB	rplI	RF_0069	RF_0141	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.990
rpsB	rpsE	RF_0069	RF_0295	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.996
rpsB	rpsF	RF_0069	RF_0143	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.996
rpsB	rpsG	RF_0069	RF_1154	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.997
rpsB	rpsI	RF_0069	RF_0995	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsB	rpsJ	RF_0069	RF_0277	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
rpsB	rpsK	RF_0069	RF_0301	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.996
rpsB	rpsL	RF_0069	RF_1155	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.996
rpsB	rpsN	RF_0069	RF_0291	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.995
rpsB	rpsR	RF_0069	RF_0142	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.995