Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RF_0182ABC transporter substrate binding protein. (149 aa)    
Predicted Functional Partners:
RF_0080
ABC transporter permease protein; Could be part of an ABC transporter complex; Belongs to the MlaE permease family.
 
 0.997
mkl
Ribonucleotide ABC transporter ATP-binding protein.
 
 0.996
RF_0077
Unknown.
 
 0.994
vacJ
VacJ lipoprotein precursor; Belongs to the MlaA family.
 
   
 0.858
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.730
RF_0181
Unknown.
       0.725
RF_0179
Unknown.
       0.685
RF_0500
ABC transporter ATP-binding protein.
      
 0.618
RF_0579
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
      
 0.618
proP8
MFS type sugar transporter PFAM00083.
      
 0.618
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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