STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF_0193Unknown. (136 aa)    
Predicted Functional Partners:
RF_0918
Type I site-specific restriction-modification system, R (restriction) subunit.
  
    0.802
RF_0919
Type I site-specific restriction-modification system, R (restriction) subunit.
  
    0.802
RF_1377
Type I restriction-modification system methyltransferase subunit.
  
    0.802
RF_1378
Type I restriction-modification system methyltransferase subunit.
  
    0.802
RF_0237
Unknown.
  
    0.717
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.587
RF_0488
Predicted metal-dependent hydrolase.
       0.552
RF_0359
Site-specific recombinases; Cassette chromosome recombinase B.
       0.531
RF_0536
Plasmid maintenance system antidote protein.
       0.457
RF_1397
Prophage antirepressor.
       0.452
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.