Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RF_0266Ankyrin repeat. (406 aa)    
Predicted Functional Partners:
RF_1175
TPR repeats.
  
 0.812
RF_0260
TPR repeats.
   
  0.802
RF_0939
Ankyrin repeat.
  
     0.664
RF_0025
Unknown.
  
 
  0.639
RF_1099
Ankyrin repeat.
  
     0.635
RF_1306
Ankyrin repeat.
  
     0.617
RF_1087
Ankyrin repeat.
  
     0.611
RF_0580
Ankyrin repeat.
  
     0.579
RF_0922
Ankyrin repeat.
  
     0.561
RF_0970
Na+/proline symporter, signal transduction histidine kinase.
  
     0.545
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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