STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pat1Patatin-like phospholipase. (549 aa)    
Predicted Functional Partners:
RF_1306
Ankyrin repeat.
  
     0.635
RF_0314
Ankyrin repeat.
  
     0.597
RF_0939
Ankyrin repeat.
  
     0.560
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
      
 0.517
tlyA
Hemolysin A.
      
 0.514
pld
Phospholipase D (PLD) superfamily protein; Could be a virulence factor; Belongs to the phospholipase D family.
    
 
 0.511
RF_0361
Unknown.
       0.501
mccF
Microcin C7 self-immunity protein.
      
 0.471
mccF2
Microcin C7 resistance protein.
      
 0.471
acrF
Hydrophobe/amphiphile efflux-1 HAE1 family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
      
 0.471
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.