STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF_0407Glycosyltransferase. (644 aa)    
Predicted Functional Partners:
soj
ATPases involved in chromosome partitioning.
  
 
 0.862
RF_0310
Tetratricopeptide repeat domain containing protein.
  
 
 0.816
RF_0406
Unknown.
       0.773
RF_0024
Unknown.
  
 
 0.717
RF_0421
Unknown.
  
 
 0.717
RF_1142
Chromosome partitioning protein.
  
 
 0.700
manC
Mannose-1-phosphate guanylyltransferase.
 
  
 0.684
RF_0479
Unknown.
 
  
 0.681
RF_1175
TPR repeats.
  
 
 0.665
radC
DNA repair protein RadC.
  
    0.659
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.