Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
virB9_1VirB9 protein; Probable conjugal transfer protein trbG precursor. (250 aa)    
Predicted Functional Partners:
virB10
VirB10 protein.
 
 
 0.998
virB3
Type IV secretory pathway, VirB3-like protein.
 
  
 0.987
virB8_2
VirB8 protein.
 
  
 0.987
virB4_1
Type IV secretion/conjugal transfer ATPase, VirB4 family.
 
  
 0.985
virB11
VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.981
virB8_1
VirB8 protein.
  
  
 0.970
virB6_5
TrbL/VirB6 plasmid Conjugative transfer protein.
 
 
 0.940
virB9_2
VirB9 protein precursor.
  
  
0.931
virD4
VirD4 protein.
 
   
 0.931
virB4_2
Type IV secretion/conjugal transfer ATPase, VirB4 family.
 
  
 0.925
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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