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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB8_1VirB8 protein. (232 aa)    
Predicted Functional Partners:
virB9_1
VirB9 protein; Probable conjugal transfer protein trbG precursor.
  
  
 0.954
virB8_2
VirB8 protein.
     
 0.932
virB3
Type IV secretory pathway, VirB3-like protein.
  
 
 0.911
virB4_1
Type IV secretion/conjugal transfer ATPase, VirB4 family.
  
 
 0.871
virB10
VirB10 protein.
  
  
 0.861
virB9_2
VirB9 protein precursor.
  
  
 0.832
virB4_2
Type IV secretion/conjugal transfer ATPase, VirB4 family.
  
 
 0.809
virB11
VirB11 protein; Part of the Type IV secretion system. Belongs to the GSP E family.
  
  
 0.803
virB6_1
TrbL/VirB6 plasmid Conjugative transfer protein.
  
  
 0.746
virB6_3
TrbL/VirB6 plasmid Conjugative transfer protein.
  
  
 0.744
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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