STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF_0485Unknown. (273 aa)    
Predicted Functional Partners:
RF_0484
Unknown.
       0.773
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.596
lacA
Ribose-5-phosphate isomerase; Belongs to the LacAB/RpiB family.
       0.581
RF_0488
Predicted metal-dependent hydrolase.
       0.445
nlpD1
Membrane proteins related to metalloendopeptidases; Outer membrane antigenic lipoprotein B precursor.
       0.432
RF_0796
rRNA methylases.
  
     0.415
RF_0489
Probable antitoxin of toxin-antitoxin stability system.
       0.406
RF_0490
Probable toxin of toxin-antitoxin system.
       0.406
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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