Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RF_0490Probable toxin of toxin-antitoxin system. (88 aa)    
Predicted Functional Partners:
RF_0489
Probable antitoxin of toxin-antitoxin stability system.
 
 
 0.978
RF_0910
Antitoxin of toxin-antitoxin system StbD; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 0.908
thyX
Thymidylate synthase ThyX; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
       0.723
nlpD1
Membrane proteins related to metalloendopeptidases; Outer membrane antigenic lipoprotein B precursor.
       0.718
RF_0488
Predicted metal-dependent hydrolase.
       0.718
RF_0015
Antitoxin of toxin-antitoxin system StbD; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 0.675
RF_0601
Antitoxin of toxin-antitoxin system StbD; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.608
RF_0779
Antitoxin of toxin-antitoxin system Phd; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.608
RF_0788
Antitoxin of toxin-antitoxin system Phd; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.608
RF_1369
Antitoxin of toxin-antitoxin system StbD; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.608
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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