RF_0534 protein (Rickettsia felis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RF_0534

Unknown. (522 aa)

Predicted Functional Partners:

RF_0535

0.627

RF_0053

0.515

virB6_3

0.468

RF_1031

0.457

virB6_1

0.451

RF_0206

0.443

htrB

0.427

RF_1006

0.422

RF_0734

0.419

virB6_4

0.417

Your Current Organism:

Rickettsia felis

NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RF_0053	RF_0206	RF_0053	RF_0206	Putative surface antigen.	Unknown.	0.760
RF_0053	RF_0534	RF_0053	RF_0534	Putative surface antigen.	Unknown.	0.515
RF_0053	RF_0734	RF_0053	RF_0734	Putative surface antigen.	Unknown.	0.773
RF_0053	RF_1006	RF_0053	RF_1006	Putative surface antigen.	Unknown.	0.739
RF_0053	RF_1031	RF_0053	RF_1031	Putative surface antigen.	Unknown; Similar to membrane protein implicated in regulation of membrane protease activity.	0.759
RF_0053	virB6_1	RF_0053	RF_0089	Putative surface antigen.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.801
RF_0053	virB6_3	RF_0053	RF_0091	Putative surface antigen.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.801
RF_0053	virB6_4	RF_0053	RF_0092	Putative surface antigen.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.801
RF_0206	RF_0053	RF_0206	RF_0053	Unknown.	Putative surface antigen.	0.760
RF_0206	RF_0534	RF_0206	RF_0534	Unknown.	Unknown.	0.443
RF_0206	RF_0734	RF_0206	RF_0734	Unknown.	Unknown.	0.766
RF_0206	RF_1006	RF_0206	RF_1006	Unknown.	Unknown.	0.574
RF_0206	RF_1031	RF_0206	RF_1031	Unknown.	Unknown; Similar to membrane protein implicated in regulation of membrane protease activity.	0.690
RF_0206	virB6_1	RF_0206	RF_0089	Unknown.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.773
RF_0206	virB6_3	RF_0206	RF_0091	Unknown.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.773
RF_0206	virB6_4	RF_0206	RF_0092	Unknown.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.774
RF_0534	RF_0053	RF_0534	RF_0053	Unknown.	Putative surface antigen.	0.515
RF_0534	RF_0206	RF_0534	RF_0206	Unknown.	Unknown.	0.443
RF_0534	RF_0535	RF_0534	RF_0535	Unknown.	Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.	0.627
RF_0534	RF_0734	RF_0534	RF_0734	Unknown.	Unknown.	0.419