Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RF_0547Glycosyltransferase. (390 aa)    
Predicted Functional Partners:
manC
Mannose-1-phosphate guanylyltransferase.
  
  
 0.786
RF_1170
Unknown.
 
     0.775
polA
DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.625
RF_0644
Glycosyltransferase.
  
     0.613
RF_0546
Predicted hydrolases or acyltransferases.
  
    0.609
RF_0568
Unknown.
 
  
 0.592
RF_1175
TPR repeats.
  
 
 0.581
RF_1375
Unknown.
  
     0.579
RF_0545
Unknown.
       0.572
RF_1326
DAP2-like protein; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
   
 
 0.559
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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