STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asmAOuter membrane assembly protein. (841 aa)    
Predicted Functional Partners:
RF_1246
Unknown.
 
   
 0.766
rompB
Outer membrane protein B; Cell surface antigen Sca5, 168 kDa.
  
     0.741
sca3
Cell surface antigen Sca3; 319 kDa.
  
     0.732
RF_0506
Periplasmic protein TonB; Linking inner and outer membranes.
  
     0.727
RF_0053
Putative surface antigen.
  
     0.708
RF_0255
Unknown.
  
     0.701
sca13
Cell surface antigen-like protein Sca13; 219 kDa.
  
     0.694
RF_0987
Ankyrin repeat.
  
     0.680
virB6_1
TrbL/VirB6 plasmid Conjugative transfer protein.
  
     0.678
virB6_3
TrbL/VirB6 plasmid Conjugative transfer protein.
  
     0.665
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.