Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RF_0570Phage uncharacterized protein; Terminase large subunit. (419 aa)    
Predicted Functional Partners:
RF_0749
Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).
 
     0.735
RF_0471
Phage portal protein; Belongs to the phage portal family. HK97 subfamily.
 
  
 0.732
RF_0757
Unknown.
 
     0.726
virB8_2
VirB8 protein.
  
     0.692
RF_0313
Unknown.
 
     0.681
virB3
Type IV secretory pathway, VirB3-like protein.
  
     0.672
RF_0750
Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).
 
     0.630
RF_0679
Predicted permease.
  
     0.619
parB
ParB-like partition proteins; Involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication (By similarity).
       0.609
RF_0585
Unknown.
       0.574
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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