Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RF_0260 | RF_0616 | RF_0260 | RF_0616 | TPR repeats. | Unknown. | 0.791 |
RF_0260 | RF_1175 | RF_0260 | RF_1175 | TPR repeats. | TPR repeats. | 0.955 |
RF_0260 | dnaK | RF_0260 | RF_1084 | TPR repeats. | DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.953 |
RF_0260 | hscA | RF_0260 | RF_1063 | TPR repeats. | Heat shock protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB (By similarity). | 0.953 |
RF_0260 | htpG | RF_0260 | RF_1333 | TPR repeats. | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity. | 0.863 |
RF_0260 | rpoB | RF_0260 | RF_1146 | TPR repeats. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.692 |
RF_0260 | tgt | RF_0260 | RF_0191 | TPR repeats. | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form th [...] | 0.461 |
RF_0260 | tlpA | RF_0260 | RF_0618 | TPR repeats. | Thiol:disulfide interchange protein TlpA. | 0.787 |
RF_0616 | RF_0260 | RF_0616 | RF_0260 | Unknown. | TPR repeats. | 0.791 |
RF_0616 | RF_1175 | RF_0616 | RF_1175 | Unknown. | TPR repeats. | 0.847 |
RF_0616 | dnaK | RF_0616 | RF_1084 | Unknown. | DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.818 |
RF_0616 | hscA | RF_0616 | RF_1063 | Unknown. | Heat shock protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB (By similarity). | 0.818 |
RF_0616 | htpG | RF_0616 | RF_1333 | Unknown. | Heat shock protein HtpG; Molecular chaperone. Has ATPase activity. | 0.982 |
RF_0616 | infA | RF_0616 | RF_1292 | Unknown. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.812 |
RF_0616 | lysC | RF_0616 | RF_1200 | Unknown. | Aspartokinase; Belongs to the aspartokinase family. | 0.742 |
RF_0616 | rpoB | RF_0616 | RF_1146 | Unknown. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.664 |
RF_0616 | tgt | RF_0616 | RF_0191 | Unknown. | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form th [...] | 0.729 |
RF_0616 | tlpA | RF_0616 | RF_0618 | Unknown. | Thiol:disulfide interchange protein TlpA. | 0.588 |
RF_1175 | RF_0260 | RF_1175 | RF_0260 | TPR repeats. | TPR repeats. | 0.955 |
RF_1175 | RF_0616 | RF_1175 | RF_0616 | TPR repeats. | Unknown. | 0.847 |
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