STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF_0624Unknown. (856 aa)    
Predicted Functional Partners:
RF_0174
ATP-dependent helicase.
 
   
 0.894
RF_1246
Unknown.
  
     0.759
RF_1195
ABC-type transport systems periplasmic component.
  
     0.754
RF_0179
Unknown.
  
     0.739
sca13
Cell surface antigen-like protein Sca13; 219 kDa.
  
     0.739
RF_0255
Unknown.
  
     0.737
RF_0987
Ankyrin repeat.
 
     0.721
ostA
Organic solvent tolerance protein homolog; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.708
rompB
Outer membrane protein B; Cell surface antigen Sca5, 168 kDa.
  
     0.705
virB6_4
TrbL/VirB6 plasmid Conjugative transfer protein.
  
     0.699
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.