yhbH protein (Rickettsia felis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

yhbH

Probable sigma(54) modulation protein. (192 aa)

Predicted Functional Partners:

rpsU

0.986

rpmA

0.982

rplV

0.981

rpmC

0.981

rpmH

0.981

rpsI

0.981

rpmB

0.980

rplI

0.980

rpmG

0.980

rpsE

0.979

Your Current Organism:

Rickettsia felis

NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplI	rplV	RF_0141	RF_0283	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.999
rplI	rpmA	RF_0141	RF_1199	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplI	rpmB	RF_0141	RF_0083	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplI	rpmC	RF_0141	RF_0286	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.998
rplI	rpmG	RF_0141	RF_1386	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.998
rplI	rpmH	RF_0141	RF_0348	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.987
rplI	rpsE	RF_0141	RF_0295	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.998
rplI	rpsI	RF_0141	RF_0995	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplI	rpsU	RF_0141	RF_0426	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.993
rplI	yhbH	RF_0141	RF_0697	50S ribosomal protein L9; Binds to the 23S rRNA.	Probable sigma(54) modulation protein.	0.980
rplV	rplI	RF_0283	RF_0141	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	50S ribosomal protein L9; Binds to the 23S rRNA.	0.999
rplV	rpmA	RF_0283	RF_1199	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplV	rpmB	RF_0283	RF_0083	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplV	rpmC	RF_0283	RF_0286	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplV	rpmG	RF_0283	RF_1386	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.998
rplV	rpmH	RF_0283	RF_0348	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.985
rplV	rpsE	RF_0283	RF_0295	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.999
rplV	rpsI	RF_0283	RF_0995	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplV	rpsU	RF_0283	RF_0426	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.984
rplV	yhbH	RF_0283	RF_0697	50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	Probable sigma(54) modulation protein.	0.981