STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF_0707Unknown. (193 aa)    
Predicted Functional Partners:
RF_0703
Unknown; Similar to late-developmental spore coat protein.
 
  
  0.987
RF_0706
P pilus assembly protein FimD; Porin PapC (fimbrial Usher protein).
 
  
 0.953
RF_0704
Unknown.
 
 
 0.948
RF_0705
P pilus assembly protein FimD; Porin PapC; fimbrial Usher protein.
 
  
 0.924
sca3
Cell surface antigen Sca3; 319 kDa.
  
     0.537
rompB
Outer membrane protein B; Cell surface antigen Sca5, 168 kDa.
  
     0.529
RF_1302
Outer membrane protein rOmpA.
  
     0.519
RF_1254
Unknown.
  
     0.486
addA
Erythrocyte adducin alpha subunit.
  
     0.473
sca13
Cell surface antigen-like protein Sca13; 219 kDa.
  
     0.472
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.