RF_0718 protein (Rickettsia felis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RF_0718

Uncharacterized protein. (145 aa)

Predicted Functional Partners:

abcT2

0.952

kpsF

0.912

ostA

0.854

RF_0548

0.803

RF_0719

0.799

kefB

0.609

pnp

0.545

omp1

0.480

RF_0260

0.471

RF_1233

0.456

Your Current Organism:

Rickettsia felis

NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RF_0260	RF_0718	RF_0260	RF_0718	TPR repeats.	Uncharacterized protein.	0.471
RF_0260	kefB	RF_0260	RF_1283	TPR repeats.	Glutathione-regulated potassium-efflux system protein KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.636
RF_0260	omp1	RF_0260	RF_1121	TPR repeats.	Outer membrane protein omp1; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.600
RF_0260	ostA	RF_0260	RF_0254	TPR repeats.	Organic solvent tolerance protein homolog; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.575
RF_0260	pnp	RF_0260	RF_0721	TPR repeats.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.777
RF_0548	RF_0718	RF_0548	RF_0718	ABC transporter, ATP-binding protein.	Uncharacterized protein.	0.803
RF_0548	RF_1233	RF_0548	RF_1233	ABC transporter, ATP-binding protein.	Predicted permeases.	0.889
RF_0548	kefB	RF_0548	RF_1283	ABC transporter, ATP-binding protein.	Glutathione-regulated potassium-efflux system protein KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.530
RF_0548	kpsF	RF_0548	RF_0720	ABC transporter, ATP-binding protein.	KpsF protein; Belongs to the SIS family. GutQ/KpsF subfamily.	0.579
RF_0718	RF_0260	RF_0718	RF_0260	Uncharacterized protein.	TPR repeats.	0.471
RF_0718	RF_0548	RF_0718	RF_0548	Uncharacterized protein.	ABC transporter, ATP-binding protein.	0.803
RF_0718	RF_0719	RF_0718	RF_0719	Uncharacterized protein.	Unknown.	0.799
RF_0718	RF_1233	RF_0718	RF_1233	Uncharacterized protein.	Predicted permeases.	0.456
RF_0718	abcT2	RF_0718	RF_0717	Uncharacterized protein.	ABC transporter ATP-binding protein.	0.952
RF_0718	kefB	RF_0718	RF_1283	Uncharacterized protein.	Glutathione-regulated potassium-efflux system protein KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.	0.609
RF_0718	kpsF	RF_0718	RF_0720	Uncharacterized protein.	KpsF protein; Belongs to the SIS family. GutQ/KpsF subfamily.	0.912
RF_0718	omp1	RF_0718	RF_1121	Uncharacterized protein.	Outer membrane protein omp1; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.480
RF_0718	ostA	RF_0718	RF_0254	Uncharacterized protein.	Organic solvent tolerance protein homolog; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.	0.854
RF_0718	pnp	RF_0718	RF_0721	Uncharacterized protein.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.545
RF_0719	RF_0718	RF_0719	RF_0718	Unknown.	Uncharacterized protein.	0.799