Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RF_0738 | bioY2 | RF_0738 | RF_0739 | Biotin-protein ligase. | BioY family protein. | 0.566 |
bioB | bioY1 | RF_0527 | RF_0526 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | BioY family protein. | 0.910 |
bioB | bioY2 | RF_0527 | RF_0739 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | BioY family protein. | 0.640 |
bioB | birA | RF_0527 | RF_0744 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Biotin--acetyl-CoA-carboxylase ligase. | 0.971 |
bioB | folD | RF_0527 | RF_0699 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.639 |
bioB | folKP | RF_0527 | RF_0039 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Folate synthesis bifunctional protein; Bifunctional PppK and DhpS. | 0.546 |
bioY1 | bioB | RF_0526 | RF_0527 | BioY family protein. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.910 |
bioY1 | bioY2 | RF_0526 | RF_0739 | BioY family protein. | BioY family protein. | 0.923 |
bioY1 | birA | RF_0526 | RF_0744 | BioY family protein. | Biotin--acetyl-CoA-carboxylase ligase. | 0.550 |
bioY1 | folD | RF_0526 | RF_0699 | BioY family protein. | Methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.419 |
bioY1 | folKP | RF_0526 | RF_0039 | BioY family protein. | Folate synthesis bifunctional protein; Bifunctional PppK and DhpS. | 0.444 |
bioY2 | RF_0738 | RF_0739 | RF_0738 | BioY family protein. | Biotin-protein ligase. | 0.566 |
bioY2 | bioB | RF_0739 | RF_0527 | BioY family protein. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.640 |
bioY2 | bioY1 | RF_0739 | RF_0526 | BioY family protein. | BioY family protein. | 0.923 |
bioY2 | birA | RF_0739 | RF_0744 | BioY family protein. | Biotin--acetyl-CoA-carboxylase ligase. | 0.670 |
bioY2 | folC | RF_0739 | RF_0740 | BioY family protein. | Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.477 |
bioY2 | folD | RF_0739 | RF_0699 | BioY family protein. | Methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.419 |
bioY2 | folKP | RF_0739 | RF_0039 | BioY family protein. | Folate synthesis bifunctional protein; Bifunctional PppK and DhpS. | 0.444 |
birA | bioB | RF_0744 | RF_0527 | Biotin--acetyl-CoA-carboxylase ligase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.971 |
birA | bioY1 | RF_0744 | RF_0526 | Biotin--acetyl-CoA-carboxylase ligase. | BioY family protein. | 0.550 |
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