STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
birABiotin--acetyl-CoA-carboxylase ligase. (267 aa)    
Predicted Functional Partners:
accC
Acetyl-CoA carboxylase, biotin carboxylase.
 
  
 0.974
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.971
pccB
Propionyl-CoA carboxylase beta chain precursor.
 
 
 0.963
pta
Phosphate acetyltransferase Pta.
  
  
 0.809
fabF
3-oxoacyl-[acyl carrier protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
   
 0.751
tme
Malate oxidoreductase and phosphate acetyltransferase.
     
 0.726
RF_0676
Conserved hypothetical protein; Similar to predicted hydrolase of the metallo-beta-lactamase superfamily.
      0.702
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
   
 0.692
RF_0869
Putative glycoprotein endopeptidase.
 
    0.676
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.673
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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