STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvTGlycine cleavage T-protein; Aminomethyl transferase; Belongs to the GcvT family. (282 aa)    
Predicted Functional Partners:
iscA2
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.859
iscA1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.855
ubiH
2-polyprenyl-6-methoxyphenol 4-hydroxylase.
  
    0.659
rnd
Ribonuclease D.
       0.600
RF_0810
Uncharacterized conserved protein.
       0.581
RF_0896
Uncharacterized low-complexity protein; COG1357.
  
     0.573
RF_1113
Unknown.
  
    0.513
RF_0812
Unknown.
       0.494
RF_0813
Unknown.
       0.494
RF_0736
Glutathione S-transferase.
  
    0.415
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.