STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampG1AmpG-related permease. (441 aa)    
Predicted Functional Partners:
ampG4
AmpG protein.
  
  
0.928
RF_0835
Unknown.
       0.773
rfaJ
Lipopolysaccharide 1,2-glucosyltransferase RfaJ.
  
    0.513
RF_0830
Unknown.
       0.464
RF_0831
Unknown.
       0.464
RF_0829
Unknown.
       0.462
lysE
Lysine efflux permease.
       0.461
RF_0833
Unknown.
       0.461
mdlB
ABC-type multidrug transport system, ATPase and permease components.
  
  
 0.409
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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