RF_1083 protein (Rickettsia felis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RF_1083

Heat shock protease. (497 aa)

Predicted Functional Partners:

RF_0024

0.737

RF_0421

0.737

dnaK

0.711

fadB

0.601

RF_0206

0.590

rplK

0.547

rpsQ

0.540

rpsH

0.538

RF_0053

0.529

rpsF

0.522

Your Current Organism:

Rickettsia felis

NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RF_0024	RF_0421	RF_0024	RF_0421	Unknown.	Unknown.	0.814
RF_0024	RF_1083	RF_0024	RF_1083	Unknown.	Heat shock protease.	0.737
RF_0024	dnaK	RF_0024	RF_1084	Unknown.	DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.618
RF_0053	RF_0206	RF_0053	RF_0206	Putative surface antigen.	Unknown.	0.760
RF_0053	RF_1083	RF_0053	RF_1083	Putative surface antigen.	Heat shock protease.	0.529
RF_0206	RF_0053	RF_0206	RF_0053	Unknown.	Putative surface antigen.	0.760
RF_0206	RF_1083	RF_0206	RF_1083	Unknown.	Heat shock protease.	0.590
RF_0206	dnaK	RF_0206	RF_1084	Unknown.	DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.521
RF_0421	RF_0024	RF_0421	RF_0024	Unknown.	Unknown.	0.814
RF_0421	RF_1083	RF_0421	RF_1083	Unknown.	Heat shock protease.	0.737
RF_0421	dnaK	RF_0421	RF_1084	Unknown.	DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.618
RF_1083	RF_0024	RF_1083	RF_0024	Heat shock protease.	Unknown.	0.737
RF_1083	RF_0053	RF_1083	RF_0053	Heat shock protease.	Putative surface antigen.	0.529
RF_1083	RF_0206	RF_1083	RF_0206	Heat shock protease.	Unknown.	0.590
RF_1083	RF_0421	RF_1083	RF_0421	Heat shock protease.	Unknown.	0.737
RF_1083	dnaK	RF_1083	RF_1084	Heat shock protease.	DnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.711
RF_1083	fadB	RF_1083	RF_0890	Heat shock protease.	3-hydroxyacyl-CoA dehydrogenase FadB; In the C-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.601
RF_1083	rplK	RF_1083	RF_1150	Heat shock protease.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.547
RF_1083	rpsF	RF_1083	RF_0143	Heat shock protease.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.522
RF_1083	rpsH	RF_1083	RF_0292	Heat shock protease.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.538