Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RF_0643 | emrA | RF_0643 | RF_1044 | RND efflux system, outer membrane protein. | Multidrug resistance protein A. | 0.953 |
| RF_0643 | emrB | RF_0643 | RF_1124 | RND efflux system, outer membrane protein. | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | 0.411 |
| RF_1123 | emrB | RF_1123 | RF_1124 | Unknown. | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | 0.459 |
| RF_1123 | mnhE | RF_1123 | RF_1125 | Unknown. | Multisubunit Na+/H+ antiporter, MnhE subunit. | 0.459 |
| RF_1123 | pyrH | RF_1123 | RF_1126 | Unknown. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.456 |
| RF_1217 | emrA | RF_1217 | RF_1044 | Unknown. | Multidrug resistance protein A. | 0.690 |
| RF_1217 | emrB | RF_1217 | RF_1124 | Unknown. | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | 0.606 |
| clpB | emrA | RF_0150 | RF_1044 | ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family. | Multidrug resistance protein A. | 0.503 |
| clpB | emrB | RF_0150 | RF_1124 | ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family. | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | 0.416 |
| clpB | rpoZ | RF_0150 | RF_0944 | ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.523 |
| clpB | tlyA | RF_0150 | RF_0876 | ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family. | Hemolysin A. | 0.461 |
| emrA | RF_0643 | RF_1044 | RF_0643 | Multidrug resistance protein A. | RND efflux system, outer membrane protein. | 0.953 |
| emrA | RF_1217 | RF_1044 | RF_1217 | Multidrug resistance protein A. | Unknown. | 0.690 |
| emrA | clpB | RF_1044 | RF_0150 | Multidrug resistance protein A. | ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family. | 0.503 |
| emrA | emrB | RF_1044 | RF_1124 | Multidrug resistance protein A. | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | 0.945 |
| emrA | rpoZ | RF_1044 | RF_0944 | Multidrug resistance protein A. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.416 |
| emrA | tlyA | RF_1044 | RF_0876 | Multidrug resistance protein A. | Hemolysin A. | 0.416 |
| emrB | RF_0643 | RF_1124 | RF_0643 | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | RND efflux system, outer membrane protein. | 0.411 |
| emrB | RF_1123 | RF_1124 | RF_1123 | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | Unknown. | 0.459 |
| emrB | RF_1217 | RF_1124 | RF_1217 | Multidrug resistance protein B; MFS type drug exporter; Belongs to the major facilitator superfamily. | Unknown. | 0.606 |
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