Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RF_1180Unknown; Belongs to the UPF0335 family. (78 aa)    
Predicted Functional Partners:
RF_0179
Unknown.
  
   
 0.786
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.768
RF_1282
Unknown.
  
     0.761
RF_0058
Unknown.
  
   
 0.749
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.702
RF_0736
Glutathione S-transferase.
  
     0.677
RF_0624
Unknown.
  
     0.654
RF_0174
ATP-dependent helicase.
  
     0.601
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.513
secF
Protein-export membrane protein secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
       0.512
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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