virB4_2 protein (Rickettsia felis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

virB4_2

Type IV secretion/conjugal transfer ATPase, VirB4 family. (810 aa)

Predicted Functional Partners:

virB3

0.992

virB10

0.985

virB6_3

0.974

virB8_2

0.974

virB6_5

0.973

virB6_1

0.972

virB6_4

0.944

virB4_1

0.927

virB9_1

0.925

virB9_2

0.925

Your Current Organism:

Rickettsia felis

NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
virB10	virB3	RF_0467	RF_0087	VirB10 protein.	Type IV secretory pathway, VirB3-like protein.	0.998
virB10	virB4_1	RF_0467	RF_0088	VirB10 protein.	Type IV secretion/conjugal transfer ATPase, VirB4 family.	0.997
virB10	virB4_2	RF_0467	RF_1250	VirB10 protein.	Type IV secretion/conjugal transfer ATPase, VirB4 family.	0.985
virB10	virB6_1	RF_0467	RF_0089	VirB10 protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.969
virB10	virB6_3	RF_0467	RF_0091	VirB10 protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.956
virB10	virB6_4	RF_0467	RF_0092	VirB10 protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.951
virB10	virB6_5	RF_0467	RF_0093	VirB10 protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.991
virB10	virB8_2	RF_0467	RF_0465	VirB10 protein.	VirB8 protein.	0.998
virB10	virB9_1	RF_0467	RF_0462	VirB10 protein.	VirB9 protein; Probable conjugal transfer protein trbG precursor.	0.998
virB10	virB9_2	RF_0467	RF_0466	VirB10 protein.	VirB9 protein precursor.	0.995
virB3	virB10	RF_0087	RF_0467	Type IV secretory pathway, VirB3-like protein.	VirB10 protein.	0.998
virB3	virB4_1	RF_0087	RF_0088	Type IV secretory pathway, VirB3-like protein.	Type IV secretion/conjugal transfer ATPase, VirB4 family.	0.998
virB3	virB4_2	RF_0087	RF_1250	Type IV secretory pathway, VirB3-like protein.	Type IV secretion/conjugal transfer ATPase, VirB4 family.	0.992
virB3	virB6_1	RF_0087	RF_0089	Type IV secretory pathway, VirB3-like protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.985
virB3	virB6_3	RF_0087	RF_0091	Type IV secretory pathway, VirB3-like protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.986
virB3	virB6_4	RF_0087	RF_0092	Type IV secretory pathway, VirB3-like protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.973
virB3	virB6_5	RF_0087	RF_0093	Type IV secretory pathway, VirB3-like protein.	TrbL/VirB6 plasmid Conjugative transfer protein.	0.996
virB3	virB8_2	RF_0087	RF_0465	Type IV secretory pathway, VirB3-like protein.	VirB8 protein.	0.996
virB3	virB9_1	RF_0087	RF_0462	Type IV secretory pathway, VirB3-like protein.	VirB9 protein; Probable conjugal transfer protein trbG precursor.	0.987
virB3	virB9_2	RF_0087	RF_0466	Type IV secretory pathway, VirB3-like protein.	VirB9 protein precursor.	0.953