Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phaCPoly(3-hydroxyalkanoate) synthetase. (583 aa)    
Predicted Functional Partners:
RF_0238
Poly-beta-hydroxyalkanoate depolymerase.
 
  
 0.979
phbC
Poly-beta-hydroxybutyrate polymerase.
  
  
  0.964
fadB
3-hydroxyacyl-CoA dehydrogenase FadB; In the C-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.955
pta
Phosphate acetyltransferase Pta.
  
 0.948
phbB
Acetoacetyl-CoA reductase.
  
 
 0.931
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
 
  
 0.708
RF_0680
Predicted hydrolases or acyltransferases.
 
   
 0.567
pld
Phospholipase D (PLD) superfamily protein; Could be a virulence factor; Belongs to the phospholipase D family.
       0.496
RF_0583
Predicted permease.
  
     0.411
ubiD
UbiD family decarboxylases; Belongs to the UbiD family.
       0.401
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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