STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF_1302Outer membrane protein rOmpA. (189 aa)    
Predicted Functional Partners:
RF_1301
Outer membrane protein rOmpA.
       0.773
RF_1326
DAP2-like protein; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
 
     0.688
RF_1246
Unknown.
  
     0.576
RF_0707
Unknown.
  
     0.519
RF_0706
P pilus assembly protein FimD; Porin PapC (fimbrial Usher protein).
  
    0.507
RF_0705
P pilus assembly protein FimD; Porin PapC; fimbrial Usher protein.
  
    0.489
RF_0252
Unknown.
  
     0.487
virB6_1
TrbL/VirB6 plasmid Conjugative transfer protein.
  
    0.459
virB6_4
TrbL/VirB6 plasmid Conjugative transfer protein.
  
    0.447
RF_0255
Unknown.
  
     0.446
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.