STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF_1339Predicted transcriptional regulator; Containing the CopG/Arc/MetJ DNA-binding domain. (93 aa)    
Predicted Functional Partners:
RF_0787
Toxin of toxin-antitoxin system ParE; COG3668.
  
 
 0.959
RF_1343
Growth inhibitor.
   
 
 0.729
RF_0731
Antitoxin of toxin-antitoxin system Phd; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.649
RF_1340
Uracil-DNA glycosylase, family 4.
 
     0.608
RF_0732
Toxin of toxin-antitoxin system; Containing PIN domain for nucleic acid binding.
  
     0.534
RF_0271
Toxin of toxin-antitoxin system; Containing PIN domain for nucleic acid binding.
  
     0.530
RF_0272
Antitoxin of toxin-antitoxin system Phd; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.501
RF_1341
Ribosomal large subunit pseudouridine synthases, RluD subfamily; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.422
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.