STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RF_1340Uracil-DNA glycosylase, family 4. (262 aa)    
Predicted Functional Partners:
RF_0869
Putative glycoprotein endopeptidase.
  
    0.678
gltA
Citrate synthase I.
     
 0.668
ssb
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.620
RF_1341
Ribosomal large subunit pseudouridine synthases, RluD subfamily; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.611
RF_1339
Predicted transcriptional regulator; Containing the CopG/Arc/MetJ DNA-binding domain.
 
     0.608
polA
DNA polymerase I (POL I); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.601
tme
Malate oxidoreductase and phosphate acetyltransferase.
       0.523
gltD
NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
       0.520
RF_0310
Tetratricopeptide repeat domain containing protein.
  
    0.449
RF_1342
Unknown.
       0.433
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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