RF_1366 protein (Rickettsia felis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RF_1366

Conserved hypothetical protein. (231 aa)

Predicted Functional Partners:

ampC

0.746

RF_0755

0.736

RF_0479

0.712

RF_0749

0.709

RF_1368

0.621

RF_0471

0.596

RF_0750

0.491

phnP

0.470

RF_0757

0.453

RF_0617

0.413

Your Current Organism:

Rickettsia felis

NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RF_0471	RF_0479	RF_0471	RF_0479	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	Unknown.	0.950
RF_0471	RF_0749	RF_0471	RF_0749	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	0.981
RF_0471	RF_0750	RF_0471	RF_0750	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	0.921
RF_0471	RF_0755	RF_0471	RF_0755	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	Conserved hypothetical protein.	0.950
RF_0471	RF_0757	RF_0471	RF_0757	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	Unknown.	0.770
RF_0471	RF_1366	RF_0471	RF_1366	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	Conserved hypothetical protein.	0.596
RF_0479	RF_0471	RF_0479	RF_0471	Unknown.	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	0.950
RF_0479	RF_0749	RF_0479	RF_0749	Unknown.	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	0.942
RF_0479	RF_0750	RF_0479	RF_0750	Unknown.	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	0.907
RF_0479	RF_0755	RF_0479	RF_0755	Unknown.	Conserved hypothetical protein.	0.966
RF_0479	RF_0757	RF_0479	RF_0757	Unknown.	Unknown.	0.890
RF_0479	RF_1366	RF_0479	RF_1366	Unknown.	Conserved hypothetical protein.	0.712
RF_0617	RF_1366	RF_0617	RF_1366	Protocatechuate-3,4-dioxygenase, beta subunit; Belongs to the intradiol ring-cleavage dioxygenase family.	Conserved hypothetical protein.	0.413
RF_0749	RF_0471	RF_0749	RF_0471	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	0.981
RF_0749	RF_0479	RF_0749	RF_0479	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	Unknown.	0.942
RF_0749	RF_0750	RF_0749	RF_0750	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	0.996
RF_0749	RF_0755	RF_0749	RF_0755	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	Conserved hypothetical protein.	0.970
RF_0749	RF_0757	RF_0749	RF_0757	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	Unknown.	0.883
RF_0749	RF_1366	RF_0749	RF_1366	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	Conserved hypothetical protein.	0.709
RF_0750	RF_0471	RF_0750	RF_0471	Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).	Phage portal protein; Belongs to the phage portal family. HK97 subfamily.	0.921