STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
proP7MFS type sugar transporter PFAM00083. (423 aa)    
Predicted Functional Partners:
hemF
Coproporphyrinogen III oxidase precursor; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
       0.779
RF_0874
Unknown.
     
 0.681
RF_0749
Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).
   
    0.635
RF_0750
Phage prohead protease (HK97 family) and phage major capsid protein (HK97 family).
   
    0.635
gltD
NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
   
  
 0.536
RF_1394
TPR; Similar to O-linked GlcNAc transferase.
       0.529
fadB
3-hydroxyacyl-CoA dehydrogenase FadB; In the C-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.505
RF_1393
Transposase.
       0.495
RF_0815
Na+/proline symporter and signal transduction histidine kinase; Sodium:solute symporter family, SSF.
      
 0.455
glnA
Glutamine synthetase.
      
 0.411
Your Current Organism:
Rickettsia felis
NCBI taxonomy Id: 315456
Other names: R. felis URRWXCal2, Rickettsia felis URRWXCal2, Rickettsia felis str. URRWXCal2, Rickettsia felis strain URRWXCal2
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