STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABS20898.1PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: btk:BT9727_0565 sulfate transporter. (483 aa)    
Predicted Functional Partners:
ABS23416.1
Beta-ketoacyl synthase; PFAM: AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_3985 short-chain dehydrogenase/reductase SDR.
  
 
 0.888
ABS22388.1
KEGG: bat:BAS3147 protein-tyrosine phosphatase-like protein.
   
   0.792
ABS24000.1
TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bce:BC5292 NADH-quinone oxidoreductase chain M.
  
 
 0.765
ABS20846.1
PFAM: Ankyrin; KEGG: btl:BALH_0504 ankyrin repeat protein.
    
 
 0.726
ABS21084.1
KEGG: btl:BALH_1955 hypothetical protein.
    
 
 0.726
ABS21132.1
PFAM: metallophosphoesterase; KEGG: btl:BALH_0903 DNA repair exonuclease.
  
   0.683
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.683
ABS21007.1
KEGG: bce:BC0825 hypothetical protein.
    
   0.672
ABS21569.1
PFAM: Cytochrome b/b6 domain; KEGG: btl:BALH_1377 menaquinol-cytochrome c reductase, cytochrome b subunit.
    
   0.672
ABS21570.1
Cytochrome c class I; Component of the menaquinol-cytochrome c reductase complex.
    
   0.672
Your Current Organism:
Bacillus cytotoxicus
NCBI taxonomy Id: 315749
Other names: B. cytotoxicus NVH 391-98, Bacillus cereus NVH 391-98, Bacillus cereus subsp. cytotoxicus NVH 391-98, Bacillus cereus subsp. cytotoxis NVH 391-98, Bacillus cytotoxicus NVH 391-98, Bacillus cytotoxicus str. NVH 391-98, Bacillus cytotoxicus strain NVH 391-98, Bacillus cytotoxis NVH 391-98
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