STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABS21228.1KEGG: bca:BCE_1296 hypothetical protein; Belongs to the UPF0736 family. (248 aa)    
Predicted Functional Partners:
ABS21227.1
KEGG: bce:BC1175 hypothetical cytosolic protein.
 
     0.845
ABS23509.1
KEGG: btl:BALH_4189 hypothetical protein.
  
     0.774
ABS23399.1
TIGRFAM: Sporulation stage VI protein D; PFAM: Peptidoglycan-binding LysM; KEGG: btl:BALH_4053 stage VI sporulation protein D.
  
     0.773
ABS20762.1
KEGG: btl:BALH_0419 hypothetical protein.
  
     0.772
ABS22873.1
KEGG: bce:BC3936 hypothetical cytosolic protein.
  
     0.770
ABS21551.1
KEGG: bca:BCE_1633 hypothetical protein.
  
     0.769
ABS20429.1
TIGRFAM: Spore cortex biosynthesis protein YabQ; KEGG: btk:BT9727_0054 probable membrane protein.
  
     0.768
ABS23126.1
KEGG: bca:BCE_4273 hypothetical protein.
  
     0.768
ABS21142.1
KEGG: bce:BC1028 hypothetical protein.
  
     0.764
ABS23759.1
TIGRFAM: Spore coat protein YutH; KEGG: bce:BC4954 CotS-related protein.
  
     0.763
Your Current Organism:
Bacillus cytotoxicus
NCBI taxonomy Id: 315749
Other names: B. cytotoxicus NVH 391-98, Bacillus cereus NVH 391-98, Bacillus cereus subsp. cytotoxicus NVH 391-98, Bacillus cereus subsp. cytotoxis NVH 391-98, Bacillus cytotoxicus NVH 391-98, Bacillus cytotoxicus str. NVH 391-98, Bacillus cytotoxicus strain NVH 391-98, Bacillus cytotoxis NVH 391-98
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.