STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABS23425.1KEGG: bce:BC4495 germination protein GerM. (348 aa)    
Predicted Functional Partners:
ABS23114.1
TIGRFAM: Sporulation stage III protein AF; KEGG: bat:BAS4092 stage III sporulation protein AF.
  
    0.817
ABS23118.1
TIGRFAM: Sporulation stage III protein AB; KEGG: bca:BCE_4265 stage III sporulation protein AB.
  
    0.814
ABS23112.1
KEGG: bce:BC4186 stage III sporulation protein AH.
 
    0.808
ABS23398.1
TIGRFAM: Spore coat protein YsxE; KEGG: bce:BC4466 CotS-related protein.
  
    0.800
ABS23399.1
TIGRFAM: Sporulation stage VI protein D; PFAM: Peptidoglycan-binding LysM; KEGG: btl:BALH_4053 stage VI sporulation protein D.
  
    0.780
ABS20429.1
TIGRFAM: Spore cortex biosynthesis protein YabQ; KEGG: btk:BT9727_0054 probable membrane protein.
  
     0.765
ABS20762.1
KEGG: btl:BALH_0419 hypothetical protein.
  
     0.753
ABS20603.1
KEGG: bca:BCE_0271 lipoprotein, putative.
  
    0.747
ABS23759.1
TIGRFAM: Spore coat protein YutH; KEGG: bce:BC4954 CotS-related protein.
  
     0.746
ABS21142.1
KEGG: bce:BC1028 hypothetical protein.
  
    0.743
Your Current Organism:
Bacillus cytotoxicus
NCBI taxonomy Id: 315749
Other names: B. cytotoxicus NVH 391-98, Bacillus cereus NVH 391-98, Bacillus cereus subsp. cytotoxicus NVH 391-98, Bacillus cereus subsp. cytotoxis NVH 391-98, Bacillus cytotoxicus NVH 391-98, Bacillus cytotoxicus str. NVH 391-98, Bacillus cytotoxicus strain NVH 391-98, Bacillus cytotoxis NVH 391-98
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