STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPUM_05414-carboxymuconolactone decarboxylase. (124 aa)    
Predicted Functional Partners:
BPUM_0598
Adenylosuccinate lyase; Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.816
BPUM_0614
CoA-transferase.
  
 
 0.611
BPUM_0613
CoA-transferase.
  
 
 0.598
BPUM_1596
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.496
msrB
Peptide methionine sulfoxide reductase.
 
   
 0.481
BPUM_2942
3-hydroxyacyl-CoA dehydrogenase.
     
 0.447
BPUM_1286
Oxidoreductase.
  
 
  0.436
BPUM_3412
3-hydroxyisobutyrate dehydrogenase.
  
 
  0.436
garR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tartronate semialdehyde to glycerate.
  
 
  0.436
BPUM_0457
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase.
 
  
 0.431
Your Current Organism:
Bacillus pumilus
NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.