Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BPUM_0052 | BPUM_0649 | BPUM_0052 | BPUM_0649 | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | ABC transporter substrate-binding protein. | 0.826 |
BPUM_0052 | BPUM_0870 | BPUM_0052 | BPUM_0870 | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Endonuclease. | 0.888 |
BPUM_0052 | BPUM_2901 | BPUM_0052 | BPUM_2901 | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.668 |
BPUM_0052 | BPUM_3604 | BPUM_0052 | BPUM_3604 | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Nucleoside hydrolase. | 0.826 |
BPUM_0052 | cpdB | BPUM_0052 | BPUM_0732 | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 2', 3'-cyclic nucleotide 2'-phosphodiesterase; In Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate. | 0.691 |
BPUM_0052 | guaA | BPUM_0052 | BPUM_0548 | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.884 |
BPUM_0052 | guaB | BPUM_0052 | BPUM_0504 | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.860 |
BPUM_0649 | BPUM_0052 | BPUM_0649 | BPUM_0052 | ABC transporter substrate-binding protein. | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.826 |
BPUM_0649 | BPUM_0870 | BPUM_0649 | BPUM_0870 | ABC transporter substrate-binding protein. | Endonuclease. | 0.769 |
BPUM_0649 | BPUM_2263 | BPUM_0649 | BPUM_2263 | ABC transporter substrate-binding protein. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.435 |
BPUM_0649 | BPUM_2901 | BPUM_0649 | BPUM_2901 | ABC transporter substrate-binding protein. | 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.706 |
BPUM_0649 | BPUM_3604 | BPUM_0649 | BPUM_3604 | ABC transporter substrate-binding protein. | Nucleoside hydrolase. | 0.576 |
BPUM_0649 | cpdB | BPUM_0649 | BPUM_0732 | ABC transporter substrate-binding protein. | 2', 3'-cyclic nucleotide 2'-phosphodiesterase; In Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate. | 0.679 |
BPUM_0649 | deoA | BPUM_0649 | BPUM_3585 | ABC transporter substrate-binding protein. | Thymidine phosphorylase; Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. | 0.557 |
BPUM_0870 | BPUM_0052 | BPUM_0870 | BPUM_0052 | Endonuclease. | Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.888 |
BPUM_0870 | BPUM_0649 | BPUM_0870 | BPUM_0649 | Endonuclease. | ABC transporter substrate-binding protein. | 0.769 |
BPUM_0870 | BPUM_2263 | BPUM_0870 | BPUM_2263 | Endonuclease. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.775 |
BPUM_0870 | BPUM_2901 | BPUM_0870 | BPUM_2901 | Endonuclease. | 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.752 |
BPUM_0870 | BPUM_3604 | BPUM_0870 | BPUM_3604 | Endonuclease. | Nucleoside hydrolase. | 0.769 |
BPUM_0870 | cinA | BPUM_0870 | BPUM_1597 | Endonuclease. | Damage-inducible protein CinA; Belongs to the CinA family. | 0.999 |
page 1 of 4