BPUM_0979 protein (Bacillus pumilus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BPUM_0979

Alanine racemase. (368 aa)

Predicted Functional Partners:

ilvA

0.657

BPUM_1485

0.481

BPUM_1484

0.479

BPUM_0978

0.468

BPUM_0980

0.402

Your Current Organism:

Bacillus pumilus

NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPUM_0978	BPUM_0979	BPUM_0978	BPUM_0979	Competence protein.	Alanine racemase.	0.468
BPUM_0979	BPUM_0978	BPUM_0979	BPUM_0978	Alanine racemase.	Competence protein.	0.468
BPUM_0979	BPUM_0980	BPUM_0979	BPUM_0980	Alanine racemase.	Hypothetical protein.	0.402
BPUM_0979	BPUM_1484	BPUM_0979	BPUM_1484	Alanine racemase.	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.479
BPUM_0979	BPUM_1485	BPUM_0979	BPUM_1485	Alanine racemase.	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.481
BPUM_0979	ilvA	BPUM_0979	BPUM_1911	Alanine racemase.	Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	0.657
BPUM_0980	BPUM_0979	BPUM_0980	BPUM_0979	Hypothetical protein.	Alanine racemase.	0.402
BPUM_1484	BPUM_0979	BPUM_1484	BPUM_0979	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	Alanine racemase.	0.479
BPUM_1484	BPUM_1485	BPUM_1484	BPUM_1485	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.999
BPUM_1484	ilvA	BPUM_1484	BPUM_1911	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	0.697
BPUM_1485	BPUM_0979	BPUM_1485	BPUM_0979	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	Alanine racemase.	0.481
BPUM_1485	BPUM_1484	BPUM_1485	BPUM_1484	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.999
BPUM_1485	ilvA	BPUM_1485	BPUM_1911	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	0.689
ilvA	BPUM_0979	BPUM_1911	BPUM_0979	Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	Alanine racemase.	0.657
ilvA	BPUM_1484	BPUM_1911	BPUM_1484	Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.697
ilvA	BPUM_1485	BPUM_1911	BPUM_1485	Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.	Serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.689