Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BPUM_0481 | BPUM_0876 | Aminoglycoside adenylyltransferase. | Carbon-nitrogen hydrolase. | 0.565 |
BPUM_0481 | BPUM_1137 | Aminoglycoside adenylyltransferase. | Ribosomal-protein-serine acetyltransferase. | 0.788 |
BPUM_0481 | BPUM_1199 | Aminoglycoside adenylyltransferase. | Hypothetical protein. | 0.544 |
BPUM_0481 | BPUM_1814 | Aminoglycoside adenylyltransferase. | Glutamate synthase. | 0.690 |
BPUM_0481 | BPUM_2621 | Aminoglycoside adenylyltransferase. | Chorismate mutase; Catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate. | 0.687 |
BPUM_0585 | BPUM_0876 | Alanine acetyltransferase. | Carbon-nitrogen hydrolase. | 0.565 |
BPUM_0585 | BPUM_1137 | Alanine acetyltransferase. | Ribosomal-protein-serine acetyltransferase. | 0.753 |
BPUM_0585 | BPUM_1814 | Alanine acetyltransferase. | Glutamate synthase. | 0.690 |
BPUM_0585 | BPUM_2621 | Alanine acetyltransferase. | Chorismate mutase; Catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate. | 0.687 |
BPUM_0876 | BPUM_0481 | Carbon-nitrogen hydrolase. | Aminoglycoside adenylyltransferase. | 0.565 |
BPUM_0876 | BPUM_0585 | Carbon-nitrogen hydrolase. | Alanine acetyltransferase. | 0.565 |
BPUM_0876 | BPUM_1136 | Carbon-nitrogen hydrolase. | Aspartate racemase; Belongs to the aspartate/glutamate racemases family. | 0.495 |
BPUM_0876 | BPUM_1137 | Carbon-nitrogen hydrolase. | Ribosomal-protein-serine acetyltransferase. | 0.565 |
BPUM_0876 | BPUM_1140 | Carbon-nitrogen hydrolase. | Acetyltransferase. | 0.565 |
BPUM_0876 | BPUM_1199 | Carbon-nitrogen hydrolase. | Hypothetical protein. | 0.565 |
BPUM_0876 | BPUM_1814 | Carbon-nitrogen hydrolase. | Glutamate synthase. | 0.999 |
BPUM_0876 | BPUM_2621 | Carbon-nitrogen hydrolase. | Chorismate mutase; Catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate. | 0.520 |
BPUM_1136 | BPUM_0876 | Aspartate racemase; Belongs to the aspartate/glutamate racemases family. | Carbon-nitrogen hydrolase. | 0.495 |
BPUM_1136 | BPUM_1137 | Aspartate racemase; Belongs to the aspartate/glutamate racemases family. | Ribosomal-protein-serine acetyltransferase. | 0.524 |
BPUM_1136 | BPUM_1138 | Aspartate racemase; Belongs to the aspartate/glutamate racemases family. | LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.524 |
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