STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPUM_1663Aspartate phosphatase. (370 aa)    
Predicted Functional Partners:
BPUM_0869
Histidine kinase.
  
 
 0.773
BPUM_3301
Nitrogen regulatory PII; Belongs to the P(II) protein family.
  
 
 
 0.732
BPUM_3420
Bacilysin biosynthesis protein BacA.
  
  
  0.722
BPUM_2561
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Belongs to the pyruvate kinase family.
    
  0.712
BPUM_3423
Carboxylate--amine ligase.
  
 
   0.705
BPUM_2569
Hypothetical protein.
  
     0.694
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.682
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.677
BPUM_2060
3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.676
BPUM_3435
Spore coat protein.
  
     0.673
Your Current Organism:
Bacillus pumilus
NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.