STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPUM_2657Oxidoreductase. (430 aa)    
Predicted Functional Partners:
BPUM_2659
Glycosyl hydrolase family 88.
 
  
  0.924
BPUM_2660
Protein lplB.
 
    0.831
BPUM_2656
Hypothetical protein.
 
     0.817
BPUM_2658
Lipoprotein YteS.
  
    0.749
BPUM_3244
2-dehydro-3-deoxygluconokinase.
  
 
 0.736
BPUM_0755
Nonribosomal peptide synthetase MxaA.
  
 
 0.711
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.641
BPUM_2665
Peptide ABC transporter substrate-binding protein.
 
     0.633
BPUM_3218
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.624
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.595
Your Current Organism:
Bacillus pumilus
NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.