STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPUM_2966Hypothetical protein. (289 aa)    
Predicted Functional Partners:
BPUM_2965
liaF.
 
  
 0.962
BPUM_2964
Histidine kinase.
  
  
 0.930
BPUM_2967
Protein LiaH.
  
  
 0.877
BPUM_2963
LuxR family transcriptional regulator.
  
  
 0.847
BPUM_2968
Hypothetical protein.
  
  
 0.766
BPUM_2041
Sigma X negative regulator.
  
 
   0.620
tgl
Transglutaminase; Probably plays a role in the assembly of the spore coat proteins by catalyzing epsilon-(gamma-glutamyl)lysine cross-links. Belongs to the bacillus TGase family.
  
     0.576
BPUM_3195
Competence protein ComFB.
  
     0.575
yneA
Peptidoglycan-binding protein; Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and/or DivIC to the division machinery; Belongs to the YneA family.
  
 
   0.564
BPUM_1300
MFS transporter.
  
     0.491
Your Current Organism:
Bacillus pumilus
NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.