STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0076Hypothetical protein; KEGG: bur:Bcep18194_B0441 outer membrane protein, haemagluttinin-like. (305 aa)    
Predicted Functional Partners:
RPE_3316
KEGG: rpd:RPD_2989 hypothetical protein.
  
     0.673
RPE_1084
PFAM: peptidase C2, calpain; KEGG: ana:all1084 unknown protein.
  
     0.579
RPE_2784
KEGG: rpc:RPC_2604 hypothetical protein.
  
     0.578
RPE_0077
Hypothetical protein.
       0.524
RPE_0075
Hypothetical protein.
       0.485
RPE_0900
PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_4686 peptidase C14, caspase catalytic subunit P20.
  
     0.429
RPE_2026
Uncharacterized peroxidase-related enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
     0.422
RPE_0078
PFAM: Carbamoyltransferase; KEGG: rpc:RPC_1437 carbamoyltransferase.
       0.415
RPE_0079
Hypothetical protein.
       0.415
RPE_0876
KEGG: rpa:RPA1154 hypothetical protein.
  
     0.401
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.