STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0091Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: rpc:RPC_0581 peptidase U6, penicillin-insensitive murein endopeptidase. (316 aa)    
Predicted Functional Partners:
RPE_4106
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882.
  
   
 0.685
RPE_4314
PFAM: conserved hypothetical protein 1620; KEGG: rpc:RPC_4271 conserved hypothetical protein 1620.
  
     0.605
RPE_4313
PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein.
  
     0.563
RPE_1409
PFAM: ribonuclease T2; KEGG: rpc:RPC_1400 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.479
RPE_4838
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4872 hypothetical protein.
 
     0.468
RPE_0443
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_0401 hypothetical protein.
  
     0.445
RPE_0937
KEGG: rpc:RPC_0912 hypothetical protein.
  
     0.414
RPE_4350
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpb:RPB_1167 ErfK/YbiS/YcfS/YnhG.
  
     0.412
RPE_0090
KEGG: rpc:RPC_0583 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with AS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
       0.411
RPE_2399
PFAM: CreA family protein; KEGG: rpc:RPC_2345 CreA.
  
     0.404
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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