STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0102KEGG: rpc:RPC_0576 hypothetical protein. (76 aa)    
Predicted Functional Partners:
RPE_0667
PFAM: protein of unknown function DUF1192; KEGG: rpc:RPC_0791 protein of unknown function DUF1192.
  
     0.718
RPE_1859
KEGG: rpc:RPC_1767 hypothetical protein.
  
     0.657
RPE_4063
KEGG: rpc:RPC_3942 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.613
RPE_2314
KEGG: rpc:RPC_3142 hypothetical protein.
  
     0.608
ku
Ku domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
       0.601
RPE_4166
KEGG: rpd:RPD_3912 hypothetical protein.
  
     0.546
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
  
     0.545
RPE_0646
PFAM: protein of unknown function DUF423; KEGG: rpc:RPC_0815 protein of unknown function DUF423.
  
     0.540
RPE_0103
PFAM: DNA repair protein RadC; KEGG: rpc:RPC_0575 DNA repair protein RadC; Belongs to the UPF0758 family.
       0.511
RPE_0695
KEGG: rpc:RPC_0768 hypothetical protein.
  
     0.500
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.