STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0107PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0571 ABC transporter related. (271 aa)    
Predicted Functional Partners:
RPE_0106
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_0572 binding-protein-dependent transport systems inner membrane component.
  
 0.983
RPE_0108
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: rpa:RPA0470 perplasmic binding protein of ABC transporter.
 
  
 0.960
RPE_0105
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rpc:RPC_0573 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.870
RPE_0104
KEGG: rpd:RPD_0256 hypothetical protein.
       0.846
RPE_3194
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2611 putative aliphatic sulfonate transport membrane component. permease subunit of an ABC transporter.
  
 0.793
RPE_1264
TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1759 nitrate transport permease.
  
 0.731
RPE_4637
TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_2055 nitrate transport permease.
  
 0.678
RPE_0109
PFAM: Creatininase; KEGG: rpb:RPB_0569 creatininase.
 
     0.671
RPE_1215
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_2184 binding-protein-dependent transport systems inner membrane component.
 
  
 0.652
RPE_1266
KEGG: rpc:RPC_1210 putative nitrate transporter component, NrtA.
 
  
 0.569
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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