STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0122KEGG: rpc:RPC_0551 nuclease (SNase-like). (254 aa)    
Predicted Functional Partners:
RPE_0123
PFAM: peptidase M48, Ste24p; KEGG: rpc:RPC_0550 peptidase M48, Ste24p.
 
     0.796
RPE_1040
PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_0986 flagellar hook-length control protein.
  
     0.672
RPE_1543
KEGG: rpc:RPC_1512 tetratricopeptide TPR_2.
  
 
 
 0.645
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.643
RPE_0967
KEGG: rpc:RPC_0943 putative flagellar assembly protein FliH.
  
     0.627
RPE_4093
KEGG: bja:bll6535 hypothetical protein.
  
     0.607
RPE_4268
TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ.
  
     0.602
RPE_4833
TIGRFAM: MJ0042 family finger-like protein; KEGG: rpc:RPC_4868 zinc finger/thioredoxin putative.
  
     0.573
RPE_0039
KEGG: rpc:RPC_0036 hypothetical protein.
  
     0.571
RPE_1539
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
 
   0.533
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.